Below are the slides from my presentation at the Edmonton R User Group Meetup (YEGRUG) on May 22, 2023:
Title: Futureverse - A Unifying Parallelization Framework in R for Everyone
Speaker: Henrik Bengtsson
Slides: HTML, PDF (46 slides)
Video: official recording (~60 minutes)
Thank you Péter Sólymos and the YEGRUG for the invitate and the opportunity!
/Henrik
Links YEGRUG: https://yegrug.github.io/ Futureverse website: https://www.futureverse.org/ future package CRAN, GitHub, pkgdown
progressr 0.13.0 is on CRAN. In the recent releases, progressr gained support for using cli to generate progress bars. Vice versa, cli can now report on progress via the progressr framework. Here are the details. For other updates to progressr, see NEWS.
The progressr package, part of the futureverse, provides a minimal API for reporting progress updates in R. The design is to separate the representation of progress updates from how they are presented.
Figure 1: A time chart of logged events for two futures resolved by two parallel workers. This is a screenshot of Slide #18 in my talk. Below are the slides for my Futureverse: Profile Parallel Code talk that I presented at the useR! 2022 conference online and hosted by the Department of Biostatistics at Vanderbilt University Medical Center.
Title: Futureverse: Profile Parallel Code
Speaker: Henrik Bengtsson
parallelly 1.32.0 is now on CRAN. One of the major updates is that availableCores() and availableWorkers(), and therefore also the future framework, gained support for the ‘Fujitsu Technical Computing Suite’ job scheduler. For other updates, please see NEWS.
The parallelly package enhances the parallel package - our built-in R package for parallel processing - by improving on existing features and by adding new ones. Somewhat simplified, parallelly provides the things that you would otherwise expect to find in the parallel package.
parallelly 1.32.0 is on CRAN. This release fixes an important bug that affected users running with the Simplified Chinese, Traditional Chinese (Taiwan), or Korean locale. The bug caused makeClusterPSOCK(), and therefore also future::plan("multisession"), to fail with an error. For other updates, please see NEWS.
The parallelly package enhances the parallel package - our built-in R package for parallel processing - by improving on existing features and by adding new ones.
progressr 0.10.1 is on CRAN. I dedicate this release to all plyr users and developers out there.
The progressr package provides a minimal API for reporting progress updates in R. The design is to separate the representation of progress updates from how they are presented. What type of progress to signal is controlled by the developer. How these progress updates are rendered is controlled by the end user.
parallelly 1.31.1 is on CRAN. The parallelly package enhances the parallel package - our built-in R package for parallel processing - by improving on existing features and by adding new ones. Somewhat simplified, parallelly provides the things that you would otherwise expect to find in the parallel package. The future package relies on the parallelly package internally for local and remote parallelization.
Since my previous post on parallelly in November 2021, I’ve fixed a few bugs and added some new features to the package;
future 1.24.0 is on CRAN. It comes with one significant update related to random number generation, further deprecation of legacy future strategies, a slight improvement to plan() and tweaks(), and some bug fixes. Below are the most important changes.
One of many possible random number generators. This one was carefully designed by XKCD [CC BY-NC 2.5]. future(…, seed = TRUE) updates RNG state In future (< 1.
Happy New Year! I made some updates to the future framework during 2021 that involve overall improvements and essential preparations to go forward with some exciting new features that I’m keen to work on during 2022.
The future framework makes it easy to parallelize existing R code - often with only a minor change of code. The goal is to lower the barriers so that anyone can quickly and safely speed up their existing R code in a worry-free manner.
parallelly 1.29.0 is on CRAN. The parallelly package enhances the parallel package - our built-in R package for parallel processing - by improving on existing features and by adding new ones. Somewhat simplified, parallelly provides the things that you would otherwise expect to find in the parallel package. The future package rely on the parallelly package internally for local and remote parallelization.
Since my previous post on parallelly five months ago, the parallelly package had some bugs fixed, and it gained a few new features;
parallelly 1.26.0 is on CRAN. It comes with one major improvement and one new function:
The setup of parallel workers is now much faster, which comes from using a concurrent, instead of sequential, setup strategy
The new freePort() can be used to find a TCP port that is currently available
Faster setup of local, parallel workers In R 4.0.0, which was released in May 2020, parallel::makeCluster(n) gained the power of setting up the n local cluster nodes all at the same time, which greatly reduces to total setup time.
parallelly 1.25.0: availableCores(omit=n) and, Finally, Built-in SSH Support for MS Windows 10 Users
A piece of an ice core - more pleasing to look at than yet another illustration of a CPU core (Image credit: Ludovic Brucker, NASA’s Goddard Space Flight Center)
parallelly 1.25.0 is on CRAN. It comes with two major improvements:
You can now use availableCores(omit = n) to ask for all but n CPU cores
makeClusterPSOCK() can finally use the built-in SSH client on MS Windows 10 to set up remote workers
This is a guest post by Chris Paciorek, Department of Statistics, University of California at Berkeley.
In this post, I’ll demonstrate that you can easily use the future package in R on a cluster of machines running in the cloud, specifically on a Kubernetes cluster.
This allows you to easily doing parallel computing in R in the cloud. One advantage of doing this in the cloud is the ability to easily scale the number and type of (virtual) machines across which you run your parallel computation.
This is an announcement that future.BatchJobs - A Future API for Parallel and Distributed Processing using BatchJobs has been archived on CRAN. The package has been deprecated for years with a recommendation of using future.batchtools instead. The latter has been on CRAN since June 2017 and builds upon the batchtools package, which itself supersedes the BatchJobs package.
To wrap up the three-and-a-half year long life of future.
Luke Zappia's summary of the talk I presented Future: A Simple, Extendable, Generic Framework for Parallel Processing in R at the European Bioconductor Meeting 2020, which took place online during the week of December 14-18, 2020.
You’ll find my slides (39 slides + Q&A slides; 35 minutes) below:
Title & Abstract HTML (Google Slides; requires online access) PDF (flat slides) Video (YouTube) I want to thank the organizers for inviting me to this Bioconductor conference.
I presented Future: Simple, Friendly Parallel Processing for R (67 minutes; 59 slides + Q&A slides) at New York Open Statistical Programming Meetup, on November 9, 2020:
HTML (incremental Google Slides; requires online access) PDF (flat slides) Video (presentation starts at 0h10m30s, Q&A starts at 1h17m40s) I like to thanks everyone who attented and everyone who asked lots of brilliant questions during the Q&A. I’d also want to express my gratitude to Amada, Jared, and Noam for the invitation and making this event possible.
future 1.20.1 is on CRAN. It adds some new features, deprecates old and unwanted behaviors, adds a couple of vignettes, and fixes a few bugs.
Interactive debugging First out among the new features, and a long-running feature request, is the addition of argument split to plan(), which allows us to split, or “tee”, any output produced by futures.
The default is split = FALSE for which standard output and conditions are captured by the future and only relayed after the future has been resolved, i.
parallelly adverb
par·al·lel·ly | \ ˈpa-rə-le(l)li \ Definition: in a parallel manner future noun
fu·ture | \ ˈfyü-chər \ Definition: existing or occurring at a later time I’ve cleaned up around the house - with the recent release of future 1.20.1, the package gained a dependency on the new parallelly package. Now, if you’re like me and concerned about bloating package dependencies, I’m sure you immediately wondered why I chose to introduce a new dependency.
Each time we use R to analyze data, we rely on the assumption that functions used produce correct results. If we can’t make this assumption, we have to spend a lot of time validating every nitty detail. Luckily, we don’t have to do this. There are many reasons for why we can comfortably use R for our analyses and some of them are unique to R. Here are some I could think of while writing this blog post - I’m sure I forgot something:
Parallel ‘Digital Rain’ by Jahobr
After two-and-a-half months, future 1.19.1 is now on CRAN. As usual, there are some bug fixes and minor improvements here and there (NEWS), including things needed by the next version of furrr. For those of you who use Slurm or LSF/OpenLava as a scheduler on your high-performance compute (HPC) cluster, future::availableCores() will now do a better job respecting the CPU resources that those schedulers allocate for your R jobs.
